Difference between revisions of "CSE 7300 Research Seminar"

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* '''Theme: AI and IoT for Medicine (AIM)'''
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* '''Theme: AI for Health'''
 
* '''Instructor''': [http://www.cse.wustl.edu/~lu Prof. Chenyang Lu]
 
* '''Instructor''': [http://www.cse.wustl.edu/~lu Prof. Chenyang Lu]
−
* '''Semester''': '''Fall 2023'''
+
* '''Semester''': '''Fall 2024'''
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* '''Time''': Wednesday at 11am-12pm
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* '''Time''': Wednesday at 1 PM
 
* '''Location''': McKelvey 1030
 
* '''Location''': McKelvey 1030
 
* '''[http://www.cse.wustl.edu/~lu/talks/seminar_guidelines.pdf Guidelines]''':  
 
* '''[http://www.cse.wustl.edu/~lu/talks/seminar_guidelines.pdf Guidelines]''':  
−
* '''Recommended sources:''' NeurIPS ([http://nips.cc/]), ICML ([http://icml.cc/]), AAAI ([http://www.aaai.org/]), SIGKDD ([http://www.kdd.org/]), IJCAI ([http://www.ijcai.org/]), IMWUT ([http://dl.acm.org/journal/imwut]), HEALTH ([http://dl.acm.org/journal/health]), Digital Medicine ([http://www.nature.com/npjdigitalmed/]), Lancet Digital Health ([https://www.thelancet.com/journals/landig/issues#decade=loi_decade_201]), SenSys, MobiSys, MobiCom
+
* '''Recommended sources:''' NeurIPS ([http://nips.cc/]), ICML ([http://icml.cc/]), AAAI ([http://www.aaai.org/]), SIGKDD ([http://www.kdd.org/]), IJCAI ([http://www.ijcai.org/]), IMWUT ([http://dl.acm.org/journal/imwut]), HEALTH ([http://dl.acm.org/journal/health]), Digital Medicine ([http://www.nature.com/npjdigitalmed/]), Lancet Digital Health ([https://www.thelancet.com/journals/landig/issues#decade=loi_decade_201]), NEJM AI ([https://ai.nejm.org/])
  
 
==Presentation Schedule==
 
==Presentation Schedule==
−
=== ---Sep 06 ---===
 
−
Hangyue
 
  
−
Letzgus, Simon, Patrick Wagner, Jonas Lederer, Wojciech Samek, Klaus-Robert Müller, and Gregoire Montavon. "Toward explainable artificial intelligence for regression models: A methodological perspective." IEEE Signal Processing Magazine 39, no. 4 (2022): 40-58. [https://ieeexplore.ieee.org/abstract/document/9810062]
+
=== ---Sep 11 ---===
 +
Ziqi
  
−
=== ---Sep 13 ---===
+
Gawlikowski, J., Tassi, C.R.N., Ali, M. et al. A survey of uncertainty in deep neural networks. Artif Intell Rev 56 (Suppl 1), 1513–1589 (2023). [https://doi.org/10.1007/s10462-023-10562-9]
−
Ruiqi
 
  
−
Gupta, Akshita, Sanath Narayan, K. J. Joseph, Salman Khan, Fahad Shahbaz Khan, and Mubarak Shah. "Ow-detr: Open-world detection transformer." In Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 9235-9244. 2022. [https://openaccess.thecvf.com/content/CVPR2022/html/Gupta_OW-DETR_Open-World_Detection_Transformer_CVPR_2022_paper]
+
=== ---Sep 18 ---===
 +
Daoyi
  
−
=== ---Sep 20 ---===
+
Hüyük, A., Wei, Q., Curth, A. and van der Schaar, M., 2024. Defining Expertise: Applications to Treatment Effect Estimation. arXiv preprint arXiv:2403.00694. [https://openreview.net/pdf?id=1YPfmglNRU]
−
Jingwen
 
  
−
Dissertation Proposal Practice Talk
+
=== ---Sep 25 ---===
 +
Jason
  
−
=== ---Sep 27 ---===
+
Park, C., Awadalla, A., Kohno, T., & Patel, S. (2021). Reliable and Trustworthy Machine Learning for Health Using Dataset Shift Detection. In M. Ranzato, A. Beygelzimer, Y. Dauphin, P. S. Liang, & J. W. Vaughan (Eds.), Advances in Neural Information Processing Systems (Vol. 34, pp. 3043–3056).
−
Bing
+
[https://proceedings.neurips.cc/paper_files/paper/2021/file/17e23e50bedc63b4095e3d8204ce063b-Paper.pdf]
  
−
Li, Xiang Lisa, and Percy Liang. "Prefix-tuning: Optimizing continuous prompts for generation." arXiv preprint arXiv:2101.00190 (2021). [https://aclanthology.org/2021.acl-long.353.pdf]
+
=== ---Oct 02 ---===
 +
Ben
  
−
=== ---Oct 04 ---===
+
Bick, A., Li, K.Y., Xing, E.P., Kolter, J.Z. and Gu, A., 2024. Transformers to SSMs: Distilling Quadratic Knowledge to Subquadratic Models. arXiv preprint arXiv:2408.10189. [https://arxiv.org/pdf/2408.10189]
−
Ziqi
 
  
−
Li, Y., Hu, P., Liu, Z., Peng, D., Zhou, J. T., & Peng, X. "Contrastive Clustering." Proceedings of the AAAI Conference on Artificial Intelligence, vol. 35, no. 10, 2021, pp. 8547-8555. [https://arxiv.org/pdf/2009.09687.pdf]
+
Dao, T. and Gu, A., 2024. Transformers are SSMs: Generalized models and efficient algorithms through structured state space duality. arXiv preprint arXiv:2405.21060. [https://arxiv.org/pdf/2405.21060]
  
−
=== ---Oct 11 ---===
+
=== ---Oct 09 ---===
−
Ben
+
Claire
  
−
Mao, H., Liu, H., Dou, J. X., & Benos, P. V. (2022, November). Towards cross-modal causal structure and representation learning. In Machine Learning for Health (pp. 120-140). PMLR. [https://proceedings.mlr.press/v193/mao22a/mao22a.pdf]
+
Qian Z, Zhang Y, Bica I, Wood A, van der Schaar M. Synctwin: Treatment effect estimation with longitudinal outcomes. Advances in Neural Information Processing Systems. 2021 Dec 6;34:3178-90. [https://proceedings.neurips.cc/paper_files/paper/2021/file/19485224d128528da1602ca47383f078-Paper.pdf]
  
−
=== ---Oct 18 ---===
+
=== ---Oct 16 ---===
−
Cancelled
+
Wenyu
  
−
=== ---Oct 25 ---===
+
Nouha Dziri, Ximing Lu, Melanie Sclar, Xiang Lorraine Li, Liwei Jiang, Bill Yuchen Lin, Peter West, Chandra Bhagavatula, Ronan Le Bras, Jena D. Hwang, Soumya Sanyal, Sean Welleck, Xiang Ren, Allyson Ettinger, Zaid Harchaoui, and Yejin Choi. 2024. Faith and fate: limits of transformers on compositionality. In Proceedings of the 37th International Conference on Neural Information Processing Systems (NIPS '23). Curran Associates Inc., Red Hook, NY, USA, Article 3081, 70293–70332.
−
Daoyi
+
[https://dl.acm.org/doi/10.5555/3666122.3669203]
  
−
Ravindra, N. G., Espinosa, C., Berson, E., Phongpreecha, T., Zhao, P., Becker, M., ... & Aghaeepour, N. (2023). Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity. NPJ Digital Medicine, 6(1), 171. [https://www.nature.com/articles/s41746-023-00911-x]
+
=== ---Oct 23 ---===
 +
Di
  
−
=== ---Nov 01 ---===
+
Xu, Shusheng, Wei Fu, Jiaxuan Gao, Wenjie Ye, Weilin Liu, Zhiyu Mei, Guangju Wang, Chao Yu, and Yi Wu. "Is dpo superior to ppo for llm alignment? a comprehensive study." arXiv preprint arXiv:2404.10719 (2024). [https://arxiv.org/pdf/2404.10719]
−
Charles
 
  
−
Liu, H., Tam, D., Muqeeth, M., Mohta, J., Huang, T., Bansal, M., & Raffel, C. A. (2022). Few-shot parameter-efficient fine-tuning is better and cheaper than in-context learning. Advances in Neural Information Processing Systems, 35, 1950-1965. [https://proceedings.neurips.cc/paper_files/paper/2022/file/0cde695b83bd186c1fd456302888454c-Paper-Conference.pdf]
+
=== ---Oct 30 ---===
 +
Behrooz
  
−
Hu, E. J. . yelong shen, Phillip Wallis, Zeyuan Allen-Zhu, Yuanzhi Li, Shean Wang, Lu Wang, and Weizhu Chen. (2022) LoRA: Low-rank adaptation of large language models. In International Conference on Learning Representations (Vol. 3, p. 7).
+
Renc, Pawel, Yugang Jia, Anthony E. Samir, Jaroslaw Was, Quanzheng Li, David W. Bates, and Arkadiusz Sitek. "Zero shot health trajectory prediction using transformer." NPJ Digital Medicine 7, no. 1 (2024): 256. [https://www.nature.com/articles/s41746-024-01235-0]
−
https://arxiv.org/pdf/2106.09685.pdf
 
  
−
=== ---Nov 08 ---===
+
=== ---Nov 06 ---===
−
Jiaming
+
Prince
  
−
Ghosh, Anurag, et al. "REACT: Streaming Video Analytics On The Edge With Asynchronous Cloud Support." Proceedings of the 8th ACM/IEEE Conference on Internet of Things Design and Implementation. 2023. [https://dl.acm.org/doi/pdf/10.1145/3576842.3582385]
+
Fan, Na, Zeyue Tian, Amartansh Dubey, Samruddhi Deshmukh, Ross Murch, and Qifeng Chen. "Multitarget Device-Free Localization via Cross-Domain Wi-Fi RSS Training Data and Attentional Prior Fusion." In Proceedings of the AAAI Conference on Artificial Intelligence, vol. 38, no. 1, pp. 91-99. 2024. [https://ojs.aaai.org/index.php/AAAI/article/view/27759]
  
−
=== ---Nov 15 ---===
+
=== ---Nov 13 ---===
−
Claire
+
Prince
  
−
Brathwaite, R., Ssewamala, F. M., Neilands, T. B., Okumu, M., Mutumba, M., Damulira, C., ... & McKay, M. M. (2021). Predicting the individualized risk of poor adherence to ART medication among adolescents living with HIV in Uganda: the Suubi+ Adherence study. African Journal of Reproduction and Gynaecological Endoscopy, 24(6), e25756. [https://onlinelibrary.wiley.com/share/FWHDDNGXEJQXVBFXJ78D?target=10.1002/jia2.25756]
+
Fan, Na, Zeyue Tian, Amartansh Dubey, Samruddhi Deshmukh, Ross Murch, and Qifeng Chen. "Multitarget Device-Free Localization via Cross-Domain Wi-Fi RSS Training Data and Attentional Prior Fusion." In Proceedings of the AAAI Conference on Artificial Intelligence, vol. 38, no. 1, pp. 91-99. 2024. [https://ojs.aaai.org/index.php/AAAI/article/view/27759]
  
−
=== ---Nov 22 ---===
+
=== ---Nov 20 ---===
−
Thanksgiving Break
+
Peiqi
  
−
=== ---Nov 29 ---===
+
Nguyen, Thao, Haotian Liu, Yuheng Li, Mu Cai, Utkarsh Ojha, and Yong Jae Lee. "Yo'LLaVA: Your Personalized Language and Vision Assistant." arXiv preprint arXiv:2406.09400 (2024). [https://arxiv.org/html/2406.09400v1]
−
Mingzhen
 
  
−
Acevedo, Andrea, Anna Merino, Laura Boldú, Angel Molina, Santiago Alférez, and José Rodellar. "A new convolutional neural network predictive model for the automatic recognition of hypogranulated neutrophils in myelodysplastic syndromes." Computers in Biology and Medicine 134 (2021): 104479. [https://www.sciencedirect.com/science/article/pii/S0010482521002730]
+
=== ---Nov 27 ---===
 +
Thanksgiving
  
−
Lewis, Joshua E., Conrad W. Shebelut, Bradley R. Drumheller, Xuebao Zhang, Nithya Shanmugam, Michel Attieh, Michael C. Horwath et al. "An automated pipeline for differential cell counts on whole-slide bone marrow aspirate smears." Modern Pathology 36, no. 2 (2023): 100003. [https://www.sciencedirect.com/science/article/pii/S0893395222000035]
 
  
 
==Previous Semesters==
 
==Previous Semesters==
−
* [[Seminar Sprint 2023|Spring 2023]]
+
* [[Seminar Spring 2024|Spring 2024]]
 +
* [[Seminar Fall 2023|Fall 2023]]
 +
* [[Seminar Spring 2023|Spring 2023]]
 
* [[Seminar Fall 2022|Fall 2022]]
 
* [[Seminar Fall 2022|Fall 2022]]
 
* [[Seminar Summer 2022|Summer 2022]]
 
* [[Seminar Summer 2022|Summer 2022]]

Latest revision as of 19:28, 20 November 2024

  • Theme: AI for Health
  • Instructor: Prof. Chenyang Lu
  • Semester: Fall 2024
  • Time: Wednesday at 1 PM
  • Location: McKelvey 1030
  • Guidelines:
  • Recommended sources: NeurIPS ([1]), ICML ([2]), AAAI ([3]), SIGKDD ([4]), IJCAI ([5]), IMWUT ([6]), HEALTH ([7]), Digital Medicine ([8]), Lancet Digital Health ([9]), NEJM AI ([10])

Presentation Schedule

---Sep 11 ---

Ziqi

Gawlikowski, J., Tassi, C.R.N., Ali, M. et al. A survey of uncertainty in deep neural networks. Artif Intell Rev 56 (Suppl 1), 1513–1589 (2023). [11]

---Sep 18 ---

Daoyi

Hüyük, A., Wei, Q., Curth, A. and van der Schaar, M., 2024. Defining Expertise: Applications to Treatment Effect Estimation. arXiv preprint arXiv:2403.00694. [12]

---Sep 25 ---

Jason

Park, C., Awadalla, A., Kohno, T., & Patel, S. (2021). Reliable and Trustworthy Machine Learning for Health Using Dataset Shift Detection. In M. Ranzato, A. Beygelzimer, Y. Dauphin, P. S. Liang, & J. W. Vaughan (Eds.), Advances in Neural Information Processing Systems (Vol. 34, pp. 3043–3056). [13]

---Oct 02 ---

Ben

Bick, A., Li, K.Y., Xing, E.P., Kolter, J.Z. and Gu, A., 2024. Transformers to SSMs: Distilling Quadratic Knowledge to Subquadratic Models. arXiv preprint arXiv:2408.10189. [14]

Dao, T. and Gu, A., 2024. Transformers are SSMs: Generalized models and efficient algorithms through structured state space duality. arXiv preprint arXiv:2405.21060. [15]

---Oct 09 ---

Claire

Qian Z, Zhang Y, Bica I, Wood A, van der Schaar M. Synctwin: Treatment effect estimation with longitudinal outcomes. Advances in Neural Information Processing Systems. 2021 Dec 6;34:3178-90. [16]

---Oct 16 ---

Wenyu

Nouha Dziri, Ximing Lu, Melanie Sclar, Xiang Lorraine Li, Liwei Jiang, Bill Yuchen Lin, Peter West, Chandra Bhagavatula, Ronan Le Bras, Jena D. Hwang, Soumya Sanyal, Sean Welleck, Xiang Ren, Allyson Ettinger, Zaid Harchaoui, and Yejin Choi. 2024. Faith and fate: limits of transformers on compositionality. In Proceedings of the 37th International Conference on Neural Information Processing Systems (NIPS '23). Curran Associates Inc., Red Hook, NY, USA, Article 3081, 70293–70332. [17]

---Oct 23 ---

Di

Xu, Shusheng, Wei Fu, Jiaxuan Gao, Wenjie Ye, Weilin Liu, Zhiyu Mei, Guangju Wang, Chao Yu, and Yi Wu. "Is dpo superior to ppo for llm alignment? a comprehensive study." arXiv preprint arXiv:2404.10719 (2024). [18]

---Oct 30 ---

Behrooz

Renc, Pawel, Yugang Jia, Anthony E. Samir, Jaroslaw Was, Quanzheng Li, David W. Bates, and Arkadiusz Sitek. "Zero shot health trajectory prediction using transformer." NPJ Digital Medicine 7, no. 1 (2024): 256. [19]

---Nov 06 ---

Prince

Fan, Na, Zeyue Tian, Amartansh Dubey, Samruddhi Deshmukh, Ross Murch, and Qifeng Chen. "Multitarget Device-Free Localization via Cross-Domain Wi-Fi RSS Training Data and Attentional Prior Fusion." In Proceedings of the AAAI Conference on Artificial Intelligence, vol. 38, no. 1, pp. 91-99. 2024. [20]

---Nov 13 ---

Prince

Fan, Na, Zeyue Tian, Amartansh Dubey, Samruddhi Deshmukh, Ross Murch, and Qifeng Chen. "Multitarget Device-Free Localization via Cross-Domain Wi-Fi RSS Training Data and Attentional Prior Fusion." In Proceedings of the AAAI Conference on Artificial Intelligence, vol. 38, no. 1, pp. 91-99. 2024. [21]

---Nov 20 ---

Peiqi

Nguyen, Thao, Haotian Liu, Yuheng Li, Mu Cai, Utkarsh Ojha, and Yong Jae Lee. "Yo'LLaVA: Your Personalized Language and Vision Assistant." arXiv preprint arXiv:2406.09400 (2024). [22]

---Nov 27 ---

Thanksgiving


Previous Semesters

Previous Lab Meetings

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